Cycle of education: 2022/2023
The name of the faculty organization unit: The faculty Chemistry
The name of the field of study: Biotechnology
The area of study: technical sciences
The profile of studing:
The level of study: first degree study
Type of study: full time
discipline specialities : Applied biochemistry, Purification and analysis of biotechnological products
The degree after graduating from university: Bachelor of Science (BSc)
The name of the module department : Department of Biochemistry and Bioinformatics
The code of the module: 243
The module status: mandatory for teaching programme
The position in the studies teaching programme: sem: 6 / W30 L30 / 3 ECTS / E
The language of the lecture: Polish
The name of the coordinator 1: Prof. Mirosław Tyrka, DSc, PhD, Eng.
The name of the coordinator 2: Marta Sochacka-Piętal, PhD
The name of the coordinator 3: Andrzej Łyskowski, PhD, Eng.
The name of the coordinator 4: Piotr Dziadczyk, PhD, Eng.
The main aim of study: Introduction of basic techniques for controlled manipulation of prokaryotic and eukaryotic genomes for development of desired product
The general information about the module: Module is carried out in sixth semester, and comprise of 30 h of lectures, 15 h of experiments and 15 h of computational training. Module finishes with test
Teaching materials: Instrukcja do ćwiczeń i laboratoriów
1 | Węgleński P | Genetyka molekularna | PWN, Warszawa. | 1998 |
2 | Winter PC., Hickey GI., Fletcher HLK. | Krótkie wykłady; Genetyka | PWN. | 2002 |
3 | Turner PC., Mc Lennan AG., Bates AD., White MRH, | Krótkie wykłady. Biologia molekularna | PZWN, Warszawa . | 2007 |
4 | Baxevanis AD, Ouellette BFF | Bioinformatyka. Podręcznik do analizy genów i białek | PWN, Warszawa. | 2005 |
Formal requirements: registration at respective semester
Basic requirements in category knowledge: Knowledge of basic mechanisms of cell function on biochemical level
Basic requirements in category skills: Basic techniques of work with DNA and microorganisms
Basic requirements in category social competences: Knowledge of safety rules in biological laboratory individually and in team. Responsibility required when working with biological material.
MEK | The student who completed the module | Types of classes / teaching methods leading to achieving a given outcome of teaching | Methods of verifying every mentioned outcome of teaching | Relationships with KEK | Relationships with PRK |
---|---|---|---|---|---|
01 | Knows genetic engineering techniques for conrtolled manipulation of genetic material | lecture | written exam |
K_W06+++ |
P6S_WG |
02 | Basic knowledge on construction of vectors for overexpression in transgenic organisms, controlled expression of genes and production and modification of recombinant proteins produced in prokaryotic and eukaryotic expression systems | lecture | written exam |
K_W09+++ |
P6S_WG |
03 | Is familiar with trends and directions in genetic engineering and the modern techniques used for manipulation of genetic material. | lecture | written exam |
K_W12+++ |
P6S_WG |
04 | Knows techniques of manipulation of genetic material for production of recombinant proteins | lecture | written exam |
K_W14+++ |
P6S_WG |
05 | Knows methods of purification and analysis of recombinant proteins and peptides | lecture | written exam |
K_W14+++ |
P6S_WG |
06 | Is able for self-education | lecture | written exam |
K_U06+++ |
P6S_UU |
07 | Knows how to design and properly conduct and annotate experiment from the field of genetic engineering targeting bacterial transformation, selection and isolation of recombinant protein | laboratory | written test |
K_U09+++ |
P6S_UO P6S_UW |
08 | Have the knowledge to analyze and evaluate usefulness of currently used genetic engineering techniques | lectures | written exam |
K_U15+++ |
P6S_UW |
09 | Is able to design process to obtain recombinant protein at prokaryotic system with the use of suitable techniques of genetic engineering | lecture,laboratory | written exam, written test |
K_U19+++ |
P6S_UO P6S_UW |
10 | Understand the need for updating of knowledge and upgrading professional qualifications that results from the rapid development of techniques and knowledge used in genetic engineering | lecture | exam written |
K_K01+++ |
P6S_KK P6S_KR |
11 | Isable to work individually and in team, able to make decisions and follow the supervisor's orders | laboratory | observation of performance |
K_K03+++ |
P6S_KR |
12 | Understand the need for dissemination of information about advantages and drawbacks of genetic manipulations and transgenic organisms. Is able to transfer these information in plain manner | lecture |
K_K07+++ |
P6S_KO |
Attention: Depending on the epidemic situation, verification of the achieved learning outcomes specified in the study program, in particular credits and examinations at the end of specific classes, can be implemented remotely (real-time meetings).
Sem. | TK | The content | realized in | MEK |
---|---|---|---|---|
6 | TK01 | - | MEK01 MEK02 MEK03 MEK04 MEK05 MEK06 | |
6 | TK02 | - | MEK02 MEK03 MEK06 MEK07 MEK08 MEK09 MEK10 | |
6 | TK03 | - | MEK07 MEK11 MEK12 |
The type of classes | The work before classes | The participation in classes | The work after classes |
---|---|---|---|
Lecture (sem. 6) | The preparation for a test:
5.00 hours/sem. |
contact hours:
30.00 hours/sem. |
|
Laboratory (sem. 6) | The preparation for a Laboratory:
3.00 hours/sem. |
contact hours:
30.00 hours/sem. |
Finishing/Making the report:
2.00 hours/sem. |
Advice (sem. 6) | |||
Exam (sem. 6) | The preparation for an Exam:
15.00 hours/sem. |
The type of classes | The way of giving the final grade |
---|---|
Lecture | 50%; A positive mark for the test (W). Credit rating of the course depends on the number of points scored 3.0 (50.0% -60.0%); 3.5 (60.1% -70.0%); 4.0 (70.1% -80.0%); 4.5 (80.1% -90.0%); 5.0 (90.1% -100%). |
Laboratory | 25%+25%. Pass note is granted to the students who obtained positive mark for written report for laboratory, computational exercises and written test. Final score is composed of written test (60%) and report (40%). |
The final grade | OK = ZW * 0.5 * in * 0.25 + L * a + C * 0.25 * in; where: C, L, ZW represents an positive assessment of the computer exercises, laboratory and lectures, respectively in - factor including term credit or examination, w = 1.0 the first term, w = 0.9 the second term, w = 0.8 a third term. |
Required during the exam/when receiving the credit
(-)
Realized during classes/laboratories/projects
Pytania biologia molekularna.pdf
Pytania biologia molekularna.pdf
Others
(-)
Can a student use any teaching aids during the exam/when receiving the credit : no
1 | B. Bakera; M. Rakoczy-Trojanowska; M. Szeliga; M. Święcicka; M. Tyrka | Identification of candidate genes responsible for chasmogamy in wheat | 2023 |
2 | M. Dżugan; A. Łyskowski; M. Miłek | Assessing the Antimicrobial Properties of Honey Protein Components through In Silico Comparative Peptide Composition and Distribution Analysis | 2023 |
3 | P. Bednarek; A. Dorczyk; T. Drzazga; D. Jasińska; P. Krajewski; B. Ługowska; R. Martofel; P. Matysik; M. Niewińska; D. Ratajczak; K. Rączka; T. Sikora; D. Tyrka; M. Tyrka; E. Witkowski; U. Woźna-Pawlak | Genome-wide association mapping in elite winter wheat breeding for yield improvement | 2023 |
4 | Ł. Byczyński; P. Król; M. Sochacka-Piętal | Hydrophilic polyurethane films containing gastrodin as potential temporary biomaterials | 2023 |
5 | A. Czmil; S. Czmil; M. Ćmil; J. Gawor; M. Piętal; D. Plewczynski; M. Sochacka-Piętal; D. Strzałka; T. Wołkowicz; M. Wroński | NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology | 2022 |
6 | M. Dyda; G. Gołębiowska; M. Rapacz; M. Szechyńska-Hebda; M. Tyrka; I. Wąsek; M. Wędzony | Quantitative trait loci and candidate genes associated with freezing tolerance of winter triticale (× Triticosecale Wittmack) | 2022 |
7 | M. Dyda; G. Gołębiowska; M. Rapacz; M. Tyrka; M. Wędzony | Genetic mapping of adult-plant resistance genes to powdery mildew in triticale | 2022 |
8 | M. Dyda; G. Gołębiowska; M. Rapacz; M. Tyrka; M. Wędzony | Mapping of QTL and candidate genes associated with powdery mildew resistance in triticale (× Triticosecale Wittm.) | 2022 |
9 | P. Krajewski; R. Marcinkowski; R. Martofel; P. Matysik; M. Mokrzycka; M. Rakoczy-Trojanowska; M. Rokicki; S. Stojałowski; M. Tyrka; U. Woźna-Pawlak; B. Żmijewska | Genome-Wide Association Analysis for Hybrid Breeding in Wheat | 2022 |
10 | V. Csitkovits; K. Gruber; C. Kratky; B. Kräutler; A. Łyskowski | Structure-Based Demystification of Radical Catalysis by a Coenzyme B12 dependent Enzyme – Crystallographic Study of Glutamate Mutase with Cofactor Homologues | 2022 |
11 | A. Pietrusińska; M. Tyrka | Linkage of Lr55 wheat leaf rust resistance gene with microsatellite and DArT-based markers | 2021 |
12 | B. Bakera; P. Krajewski; M. Mokrzycka; M. Rakoczy-Trojanowska; M. Szeliga; M. Święcicka; M. Tyrka | Identification of Rf Genes in Hexaploid Wheat (Triticumaestivum L.) by RNA-Seq and Paralog Analyses | 2021 |
13 | B. Bakera; P. Krajewski; P. Matysik; M. Mokrzycka; M. Rakoczy-Trojanowska; M. Rokicki; S. Stojałowski; M. Szeliga; D. Tyrka; M. Tyrka | Evaluation of genetic structure in European wheat cultivars and advanced breeding lines using high-density genotyping-by-sequencing approach | 2021 |
14 | J. Buczkowicz; T. Drzazga; B. Ługowska; P. Matysik; K. Rubrycki; M. Semik; D. Tyrka; M. Tyrka; E. Witkowski | Identyfikacja efektywnych genów odporności na wybrane choroby wirusowe i grzybowe pszenicy zwyczajnej | 2021 |
15 | J. Buczkowicz; T. Drzazga; G. Fic; M. Jaromin; P. Krajewski; P. Matysik; R. Mazur; P. Milczarski; T. Sikora; M. Szeliga; D. Tyrka; M. Tyrka; E. Witkowski | Selekcja genomowa pszenicy ozimej | 2021 |
16 | K. Chen; Ł. Jaremko; M. Jaremko; A. Łyskowski | Genetic and Molecular Factors Determining Grain Weight in Rice | 2021 |
17 | B. Król; P. Król; K. Pielichowska; M. Sochacka-Piętal; Ł. Uram; M. Walczak | Synthesis and property of polyurethane elastomer for biomedical applications based on nonaromatic isocyanates, polyesters, and ethylene glycol | 2020 |
18 | E. Ciszkowicz; E. Kaznowska; P. Porzycki; M. Semik; M. Tyrka | MiR-93/miR-375: Diagnostic Potential, Aggressiveness Correlation and Common Target Genes in Prostate Cancer | 2020 |
19 | G. Czajowski; M. Karbarz; M. Pojmaj; A. Strzembicka; D. Tyrka; M. Tyrka; A. Wardyńska; M. Wędzony | Quantitative trait loci mapping of adult-plant resistance to powdery mildew in triticale | 2020 |
20 | J. Ciura; M. Szeliga; M. Tyrka | Representational Difference Analysis of Transcripts Involved in Jervine Biosynthesis | 2020 |
21 | D. Antos; M. Kołodziej; A. Łyskowski; W. Piątkowski; I. Poplewska; P. Szałański | Determination of protein crystallization kinetics by a through-flow small-angle X-ray scattering method | 2019 |
22 | J. Ciura; M. Grzesik; M. Szeliga; M. Tyrka | Identification of candidate genes involved in steroidal alkaloids biosynthesis in organ-specific transcriptomes of Veratrum nigrum L. | 2019 |
23 | M. Dyda; M. Szechyńska-Hebda; M. Tyrka; I. Wąsek; M. Wędzony | Local and systemic regulation of PSII efficiency in triticale infected by the hemibiotrophic pathogen Microdochium nivale | 2019 |
24 | M. Dziurka; K. Hura; T. Hura; A. Ostrowska; M. Tyrka | Participation of Wheat and Rye Genome in Drought Induced Senescence in Winter Triticale (X Triticosecale Wittm.) | 2019 |
25 | Z. Banaszak; A. Fiust; Z. Nita; W. Orłowska-Job; M. Pojmaj; M. Rapacz; M. Tyrka; M. Wójcik-Jagła | Sposób selekcji mrozoodpornych genotypów jęczmienia ozimego | 2019 |