Cycle of education: 2022/2023
The name of the faculty organization unit: The faculty Chemistry
The name of the field of study: Biotechnology
The area of study: technical sciences
The profile of studing:
The level of study: first degree study
Type of study: past time
discipline specialities : Applied biochemistry, Purification and analysis of biotechnological products
The degree after graduating from university: Bachelor of Science (BSc)
The name of the module department : Department of Physical Chemistry
The code of the module: 10922
The module status: mandatory for the speciality Purification and analysis of biotechnological products
The position in the studies teaching programme: sem: 6 / W18 L9 P18 / 6 ECTS / Z
The language of the lecture: Polish
The name of the coordinator 1: Tadeusz Pietryga, PhD, Eng.
The name of the coordinator 2: Katarzyna Rydel-Ciszek, PhD, Eng.
The main aim of study: Introducing the students to modern methods and computational tools used in biomolecular modeling. This knowledge is essential for studying of biotechnology processes (eg. conformation analysis, study of dynamic properties of biomolecules, designing new compounds, etc.).
The general information about the module: The module is implemented in the sixth semester. It includes 30 hours of lectures, 15 hours of laboratory and 30 hours of project. The module is ending with the credit.
Teaching materials: Instrukcje do ćwiczeń laboratoryjnych dostępne ze strony domowej koordynatora
1 | L. Piela | Idee chemii kwantowej | PWN, Warszawa. | 2003 |
2 | W. Kołos, J. Sadlej | Atom i cząsteczka | WNT Warszawa. | 1998 |
3 | A.D. Baxevanis, B.F.F. Quellette | Bioinformatyka. Podręcznik do analizy genów i białek | PWN, Warszawa. | 2005 |
4 | P. G. Higgs, T. K. Attwood | Bioinformatyka i ewolucja molekularna | PWN, Warszawa. | 2008 |
1 | T.Pietryga | Instrukcje laboratoryjne | Katedra Chemii Fizycznej. | 2012 |
Formal requirements: Registration for the given semester
Basic requirements in category knowledge: Basic knowledge in the physical chemistry, biochemistry and proteins
Basic requirements in category skills: Basic computer skills.
Basic requirements in category social competences: Ability of the cooperation and the work in the group
MEK | The student who completed the module | Types of classes / teaching methods leading to achieving a given outcome of teaching | Methods of verifying every mentioned outcome of teaching | Relationships with KEK | Relationships with PRK |
---|---|---|---|---|---|
01 | Has a basic knowledge of: -the methods of molecular and biomolecular modelling; -modeling of simple chemical reactions, spectroscopic spectra and ligand-receptor interactions; -prediction of secondary protein structure and space protein structure; -biomolecular data bases and homological analysis of protein; -structure-activity relatioships (QSAR). | lecture, laboratory | written test, written report |
K_W03++ K_W14++ |
P6S_WG |
02 | Is able to apply basic methods of biomolecular modeling to study simple chemical reactions and to predict reactivity/activity of chemical compounds based on their structure and to estimate heat effects of simple chemical processes. Is able to model a simple biotechnological process using tools of biomolecular modeling. | laboratory, team project (2) | written raport, raport from the project |
K_U08++ K_U19++ K_K03++ |
P6S_KR P6S_UO P6S_UW |
03 | Is able to find pieces of information in literature data bases and biomolecular data bases. | laboratory, team (2) project | written raport, raport from the project |
K_U01++ |
P6S_UW |
04 | Is aware that biomolecular modeling process can be multivariant one and therefore is able to work alone and collectively, make decisions and follow instructions of superiors, responsible for the research. Is also aware of the fact that biomolecular modeling methods are constantly developing and understands the necessity of additional training and improving ones professional qualifications in this | lecture, laboratory, team (2) project | written test, written report |
K_K01+ K_K03+ |
P6S_KK P6S_KR |
Attention: Depending on the epidemic situation, verification of the achieved learning outcomes specified in the study program, in particular credits and examinations at the end of specific classes, can be implemented remotely (real-time meetings).
Sem. | TK | The content | realized in | MEK |
---|---|---|---|---|
6 | TK01 | W30 | MEK01 | |
6 | TK02 | L15 | MEK02 MEK03 MEK04 | |
6 | TK03 | P30 | MEK02 MEK03 MEK04 |
The type of classes | The work before classes | The participation in classes | The work after classes |
---|---|---|---|
Lecture (sem. 6) | contact hours:
18.00 hours/sem. |
complementing/reading through notes:
15.00 hours/sem. Studying the recommended bibliography: 15.00 hours/sem. |
|
Laboratory (sem. 6) | The preparation for a Laboratory:
10.00 hours/sem. The preparation for a test: 15.00 hours/sem. |
contact hours:
9.00 hours/sem. |
Finishing/Making the report:
10.00 hours/sem. |
Project/Seminar (sem. 6) | The preparation for projects/seminars:
5.00 hours/sem. |
contact hours:
18.00 hours/sem.. |
Doing the project/report/ Keeping records:
15.00 hours/sem. |
Advice (sem. 6) | The participation in Advice:
2.00 hours/sem. |
||
Credit (sem. 6) | The preparation for a Credit:
20.00 hours/sem. |
The written credit:
2.00 hours/sem. |
The type of classes | The way of giving the final grade |
---|---|
Lecture | Written credit of lecture covering the entire range of material of lecture. Evaluation of the test depends on the number of points scored: 3,0 (50,0 %-60,0%) MP ; 3,5 (60,1%-70,0%) MP; 4,0 (70,1%-80,0%) MP; 4,5 (80,1%-90,0%) MP; 5,0 (90,1%-100%) MP. MP- max. points. |
Laboratory | Correct performance of laboratory exercises included in the schedule and correct preparation of written reports on every exercise. |
Project/Seminar | Carrying out of a computational design (2-projekt team), submission of written report on the project and its positive evaluation. |
The final grade | Final grade (K): K = 0,50 w W + 0,50 w P; where: W, P - positive evaluation of the credit of lecture, project; w - factor related to the time of credit or project, w= 1.0 first term, w = 0.9 second term , w = 0.8 third term.The grade is rounded according to WKZJK. |
Required during the exam/when receiving the credit
(-)
Realized during classes/laboratories/projects
(-)
Others
(-)
Can a student use any teaching aids during the exam/when receiving the credit : no
1 | K. Rydel-Ciszek | DFT Studies of the Activity and Reactivity of Limonene in Comparison with Selected Monoterpenes | 2024 |
2 | P. Chmielarz; T. Pacześniak; K. Rydel-Ciszek; A. Sobkowiak | Bio-Inspired Iron Pentadentate Complexes as Dioxygen Activators in the Oxidation of Cyclohexene and Limonene | 2023 |
3 | K. Rydel-Ciszek | The most reactive iron and manganese complexes with N-pentadentate ligands for dioxygen activation—synthesis, characteristics, applications | 2021 |
4 | P. Chmielarz; A. Miłaczewska; T. Pacześniak; K. Rydel-Ciszek; A. Sobkowiak | ‘Oxygen-Consuming Complexes’–Catalytic Effects of Iron–Salen Complexes with Dioxygen | 2021 |
5 | P. Błoniarz; P. Chmielarz; T. Pacześniak; K. Rydel-Ciszek; A. Sobkowiak; K. Surmacz; I. Zaborniak | Iron-Based Catalytically Active Complexes in Preparation of Functional Materials | 2020 |